Analysis of the adequasy of the sequencing depth in RNA-seq experiments.Computation and analysis of read counts obtained from intersectition of read alignments with genomic features.Analysis of the reads mapped inside/outside of the regions provided in GFF format.Easy to interpret summary of the main properties of the alignment data.Fast analysis accross the reference of genome coverage and nucleotide distribution.Starting from version 2.0 Qualimap provides multi-sample comparison of alignment and counts data. Qualimap examines sequencing alignment data in SAM/BAM files according to the features of the mapped reads and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis. Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
0 Comments
Leave a Reply. |